Release notes

v0.5.5 / 2026-02-12

• Check the shape of input of interpolation by @dachengx in https://github.com/XENONnT/appletree/pull/201

• Use numbered version of docformatter by @dachengx in https://github.com/XENONnT/appletree/pull/203

• Load data from the local downloaded path assigned by MongoDownloader by @dachengx in https://github.com/XENONnT/appletree/pull/202

• Equal probability binning on integer sample by @dachengx in https://github.com/XENONnT/appletree/pull/205

• Be able to set moves by @dachengx in https://github.com/XENONnT/appletree/pull/206

• Plot actual time series evaluation before applying chain reduction thin by @dachengx in https://github.com/XENONnT/appletree/pull/207

• Acceptance plot by @mhliu0001 in https://github.com/XENONnT/appletree/pull/210

• Add pandas version requirement by @zihaoxu98 in https://github.com/XENONnT/appletree/pull/212

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.5.4…v0.5.5

v0.5.4 / 2025-02-03

• Use importlib.resources.files and support python 3.11 by @dachengx in https://github.com/XENONnT/appletree/pull/199

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.5.3…v0.5.4

v0.5.3 / 2024-12-12

• Remove numpy version constraint by @dachengx in https://github.com/XENONnT/appletree/pull/197

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.5.2…v0.5.3

v0.5.2 / 2024-12-05

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/XENONnT/appletree/pull/182

• Use pyproject.toml to install appletree by @dachengx in https://github.com/XENONnT/appletree/pull/184

• Fix backend filename if the user changes the h5 filename by @zihaoxu98 in https://github.com/XENONnT/appletree/pull/185

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/XENONnT/appletree/pull/183

• use mongo downloader in utilix by @yuema137 in https://github.com/XENONnT/appletree/pull/190

• Add utilix to pyproject.toml by @dachengx in https://github.com/XENONnT/appletree/pull/191

• Update utilix dependency by @yuema137 in https://github.com/XENONnT/appletree/pull/192

• Switch to master for docformatter by @dachengx in https://github.com/XENONnT/appletree/pull/194

• More options for get_post_parameters by @zihaoxu98 in https://github.com/XENONnT/appletree/pull/193

New Contributors

• @yuema137 made their first contribution in https://github.com/XENONnT/appletree/pull/190

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.5.1…v0.5.2

v0.5.1 / 2024-07-31

• Fix S1 bias coordinate by @zihaoxu98 in https://github.com/XENONnT/appletree/pull/174

• Modified truncate_normal with jax.random.truncated_normal by @mhliu0001 in https://github.com/XENONnT/appletree/pull/175

• Revert “Modified truncate_normal with jax.random.truncated_normal” by @mhliu0001 in https://github.com/XENONnT/appletree/pull/176

• Change eps added to histogram to mean(eff) by @zihaoxu98 in https://github.com/XENONnT/appletree/pull/177

• Add lineage hash for all levels: Config, Plugin, Component, and Context by @dachengx in https://github.com/XENONnT/appletree/pull/178

• Separate and save lineage for all levels by @dachengx in https://github.com/XENONnT/appletree/pull/179

• Allow component lineage with no binning by @dachengx in https://github.com/XENONnT/appletree/pull/180

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.5.0…v0.5.1

v0.5.0 / 2024-06-30

• Nestv2 parameter by @zihaoxu98 in https://github.com/XENONnT/appletree/pull/167

• Nearest neighbor interpolator by @zihaoxu98 in https://github.com/XENONnT/appletree/pull/168

• Add 1D nearest neighbour and linear interpolator by @dachengx in https://github.com/XENONnT/appletree/pull/170

• Fix software versions in tests by @dachengx in https://github.com/XENONnT/appletree/pull/171

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.4.0…v0.5.0

v0.4.0 / 2024-05-27

• Try using jax.random.binomial by @dachengx in https://github.com/XENONnT/appletree/pull/148

• Turn off add_eps_to_hist in NR and ER by @FaroutYLq in https://github.com/XENONnT/appletree/pull/152

• Debug when bins_type is not set by @dachengx in https://github.com/XENONnT/appletree/pull/153

• Specifically install lxml_html_clean by @dachengx in https://github.com/XENONnT/appletree/pull/157

• Initialize context from backend by @zihaoxu98 in https://github.com/XENONnT/appletree/pull/156

• Add parameter_alias to translate parameters in par_config by @dachengx in https://github.com/XENONnT/appletree/pull/160

• Allow user to aggressively use memory by @dachengx in https://github.com/XENONnT/appletree/pull/164

• Fix a bug of plotter which contains inf by @zihaoxu98 in https://github.com/XENONnT/appletree/pull/165

New Contributors

• @FaroutYLq made their first contribution in https://github.com/XENONnT/appletree/pull/152

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.3.2…v0.4.0

v0.3.2 / 2024-03-06

• Remove scikit-learn version requirement by @dachengx in https://github.com/XENONnT/appletree/pull/131

• Use trusted publisher because username/password authentication is no longer supported by @dachengx in https://github.com/XENONnT/appletree/pull/132

• Be compatible with JAX_ENABLE_X64=1 by @dachengx in https://github.com/XENONnT/appletree/pull/134

• Raise more information when file can not be found by @dachengx in https://github.com/XENONnT/appletree/pull/135

• Preserve dtype of results in multiple_simulations by @dachengx in https://github.com/XENONnT/appletree/pull/137

• Copy memory from GPU to CPU by @dachengx in https://github.com/XENONnT/appletree/pull/139

• Bug fix when using force_no_eff with tuple data_names by @dachengx in https://github.com/XENONnT/appletree/pull/141

• Add Gamma, Negative Binomial, and Generalized Poisson Distribution by @dachengx in https://github.com/XENONnT/appletree/pull/145

• Add support for 1D fitting by @dachengx in https://github.com/XENONnT/appletree/pull/144

• Correct the sigmas in TwoHalfNorm by @zihaoxu98 in https://github.com/XENONnT/appletree/pull/143

• Plotter for MCMC diagnostics by @zihaoxu98 in https://github.com/XENONnT/appletree/pull/146

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.3.1…v0.3.2

v0.3.1 / 2024-01-12

• Smarter SigmaMap handling and needed_parameters by @xzh19980906 in https://github.com/XENONnT/appletree/pull/116

• Move messages of used parameter in SigmaMap.build by @dachengx in https://github.com/XENONnT/appletree/pull/117

• Set required_parameter as method of Config by @dachengx in https://github.com/XENONnT/appletree/pull/119

• Optional applying efficiency in multiple_simulations by @dachengx in https://github.com/XENONnT/appletree/pull/123

• Fix S1/S2 correction and gas gain when simulating S1/S2PE by @mhliu0001 in https://github.com/XENONnT/appletree/pull/122

• Prevent already cached functions from being changed by @dachengx in https://github.com/XENONnT/appletree/pull/125

• Update docstring to google style by @dachengx in https://github.com/XENONnT/appletree/pull/126

• Update conf, add napoleon by @dachengx in https://github.com/XENONnT/appletree/pull/127

• Small bug fix when no llh_name is used by @dachengx in https://github.com/XENONnT/appletree/pull/129

New Contributors

• @mhliu0001 made their first contribution in https://github.com/XENONnT/appletree/pull/122

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.3.0…v0.3.1

v0.3.0 / 2023-08-31

• Fix function name to simulate_weighted_data, nothing else changed by @dachengx in https://github.com/XENONnT/appletree/pull/99

• Stop jax from preallocating memory by @dachengx in https://github.com/XENONnT/appletree/pull/100

• fix meshgrid binning by @hoetzsch in https://github.com/XENONnT/appletree/pull/101

• Binning is not required by Component by @dachengx in https://github.com/XENONnT/appletree/pull/103

• Upper clipping on binomial randgen in normal approx by @xzh19980906 in https://github.com/XENONnT/appletree/pull/107

• Rename fake maps by @xzh19980906 in https://github.com/XENONnT/appletree/pull/106

• Update fake maps filenames by @dachengx in https://github.com/XENONnT/appletree/pull/108

• Skip mongo DB when finding files by @xzh19980906 in https://github.com/XENONnT/appletree/pull/111

• Raise error if file does not exist by @xzh19980906 in https://github.com/XENONnT/appletree/pull/110

• Rename lce to correction by @dachengx in https://github.com/XENONnT/appletree/pull/109

• Add function to check the usage of configs, check_unused_configs by @dachengx in https://github.com/XENONnT/appletree/pull/112

• Proposal to use pre-commit for continuous integration by @dachengx in https://github.com/XENONnT/appletree/pull/113

New Contributors

• @hoetzsch made their first contribution in https://github.com/XENONnT/appletree/pull/101

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.2.3…v0.3.0

v0.2.3 / 2023-05-29

• Add pip install user by @dachengx in https://github.com/XENONnT/appletree/pull/96

• Installation with various extras_requires for different CUDA support by @dachengx in https://github.com/XENONnT/appletree/pull/97

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.2.2…v0.2.3

v0.2.2 / 2023-05-25

• Stop using MANIFEST.in, move to a modern way of file system configuration by @dachengx in https://github.com/XENONnT/appletree/pull/94

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.2.1…v0.2.2

v0.2.1 / 2023-05-22

• Change variables s1 s2 to s1_area s2_area by @dachengx in https://github.com/XENONnT/appletree/pull/86

• Remove duplicated import pd by @xzh19980906 in https://github.com/XENONnT/appletree/pull/87

• Generate number of events in the defined ROI by @dachengx in https://github.com/XENONnT/appletree/pull/88

• Update DOI link by @dachengx in https://github.com/XENONnT/appletree/pull/89

• Loosen requirement after beta phase and specify jax find-links by @dachengx in https://github.com/XENONnT/appletree/pull/90

• Update notebooks by @dachengx in https://github.com/XENONnT/appletree/pull/91

• Add more tests by @dachengx in https://github.com/XENONnT/appletree/pull/92

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.2.0…v0.2.1

v0.2.0 / 2023-03-15

• Add NESTv2 yields parameterization and literature constrain by @dachengx in https://github.com/XENONnT/appletree/pull/82

• Add uncertainty on electron lifetime by @dachengx in https://github.com/XENONnT/appletree/pull/83

• Add NESTv2 NR parameters of quanta distribution’s width by @dachengx in https://github.com/XENONnT/appletree/pull/85

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.1.0…v0.2.0

v0.1.0 / 2023-02-12

• Add corner as dependency by @dachengx in https://github.com/XENONnT/appletree/pull/55

• Add .h5 backend to store MCMC results by @dachengx in https://github.com/XENONnT/appletree/pull/57

• Add document by @xzh19980906 in https://github.com/XENONnT/appletree/pull/61

• More docs by @xzh19980906 in https://github.com/XENONnT/appletree/pull/62

• Deduce and compile codes to generate Ly & Qy curve by @dachengx in https://github.com/XENONnT/appletree/pull/60

• Convert PDF spectrum to CDF by default by @xzh19980906 in https://github.com/XENONnT/appletree/pull/72

• Add R dimension for template generation by @xzh19980906 in https://github.com/XENONnT/appletree/pull/74

• Use specific config for certain llh by @dachengx in https://github.com/XENONnT/appletree/pull/78

• Config can read map and assign itself a mapping function by @dachengx in https://github.com/XENONnT/appletree/pull/79

• Stricter needed parameters check and save meta data to samples by @dachengx in https://github.com/XENONnT/appletree/pull/80

• Irregular binning option in likelihood by @xzh19980906 in https://github.com/XENONnT/appletree/pull/81

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.0.0…v0.1.0

v0.0.0 / 2022-10-13

• Add more notebooks by @dachengx in https://github.com/XENONnT/appletree/pull/52

• Introduce numpyro as dependency by @dachengx in https://github.com/XENONnT/appletree/pull/53

• Try upload to pypi by @dachengx in https://github.com/XENONnT/appletree/pull/54

Full Changelog: https://github.com/XENONnT/appletree/commits/v0.0.0